Human mobility patterns in Mexico City and their links with socioeconomic variables during the COVID-19 pandemic (preprint)

The availability of cellphone geolocation data provides a remarkable opportunity to study human mobility patterns and how these patterns are affected by the recent pandemic. Two simple centrality metrics allow us to measure two different aspects of mobility in origin-destination networks constructed with this type of data: variety of places connected to a certain node (degree) and number of people that travel to or from a given node (strength). In this contribution, we present an analysis of node degree and strength in daily origin-destination networks for Greater Mexico City during 2020. Unlike what is observed in many complex networks, these origin-destination networks are not scale free. Instead, there is a characteristic scale defined by the distribution peak; centrality distributions exhibit a skewed two-tail distribution with power law decay on each side of the peak. We found that high mobility areas tend to be closer to the city center, have higher population and better socioeconomic conditions. Areas with anomalous behavior are almost always on the periphery of the city, where we can also observe qualitative difference in mobility patterns between east and west. Finally, we study the effect of mobility restrictions due to the outbreak of the COVID-19 pandemics on these mobility patterns.

Human mobility patterns in Mexico City and their links with socioeconomic variables during the COVID-19 pandemic (preprint)

The availability of cellphone geolocation data provides a remarkable opportunity to study human mobility patterns and how these patterns are affected by the recent pandemic. Two simple centrality metrics allow us to measure two different aspects of mobility in origin-destination networks constructed with this type of data: variety of places connected to a certain node (degree) and number of people that travel to or from a given node (strength). In this contribution, we present an analysis of node degree and strength in daily origin-destination networks for Greater Mexico City during 2020. Unlike what is observed in many complex networks, these origin-destination networks are not scale free. Instead, there is a characteristic scale defined by the distribution peak; centrality distributions exhibit a skewed two-tail distribution with power law decay on each side of the peak. We found that high mobility areas tend to be closer to the city center, have higher population and better socioeconomic conditions. Areas with anomalous behavior are almost always on the periphery of the city, where we can also observe qualitative difference in mobility patterns between east and west. Finally, we study the effect of mobility restrictions due to the outbreak of the COVID-19 pandemics on these mobility patterns.

Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico (preprint)

Up to November 2021, over 200 different SARS-CoV-2 lineages circulated in Mexico. To investigate lineage replacement dynamics, we applied a phylodynamic approach to explore the evolutionary trajectories of five dominant lineages that circulated during the first year of the local epidemic. For most lineages, peaks in sampling frequencies coincided with different epidemiological waves of infection in the country. Lineages B.1.1.222 and B.1.1.519 showed comparable dynamics, represented by clades likely originating in Mexico and persisting for over a year. Lineages B.1.1.7, P.1 and B.1.617.2 also displayed similar dynamics, characterized by multiple introduction events leading to a few successful extended local transmission chains that persisted for several months. We further explored viral movements across the country, applied within the largest clades identified (belonging to lineage B.1.617.2). Many clades were located within the south region of the country, suggesting that this area played a key role in the spread of SARS-CoV-2 in Mexico.

Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico (preprint)

Up to November 2021, over 200 different SARS-CoV-2 lineages circulated in Mexico. To investigate lineage replacement dynamics, we applied a phylodynamic approach to explore the evolutionary trajectories of five dominant lineages that circulated during the first year of the local epidemic. For most lineages, peaks in sampling frequencies coincided with different epidemiological waves of infection in the country. Lineages B.1.1.222 and B.1.1.519 showed comparable dynamics, represented by clades likely originating in Mexico and persisting for over a year. Lineages B.1.1.7, P.1 and B.1.617.2 also displayed similar dynamics, characterized by multiple introduction events leading to a few successful extended local transmission chains that persisted for several months. We further explored viral movements across the country, applied within the largest clades identified (belonging to lineage B.1.617.2). Many clades were located within the south region of the country, suggesting that this area played a key role in the spread of SARS-CoV-2 in Mexico.

Intermunicipal Travel Networks of Mexico (2020-2021) (preprint)

We present a collection of networks that describe the travel patterns between municipalities in Mexico between 2020 and 2021. Using anonymized mobile device geo-location data we constructed directed, weighted networks representing the (normalized) volume of travels between municipalities. We analysed changes in global (graph total weight sum), local (centrality measures), and mesoscale (community structure) network features. We observe that changes in these features are associated with factors such as Covid-19 restrictions and population size. In general, events in early 2020 (when initial Covid-19 restrictions were implemented) induced more intense changes in network features, whereas later events had a less notable impact in network features. We believe these networks will be useful for researchers and decision makers in the areas of transportation, infrastructure planning, epidemic control and network science at large.